2KNF Blood Clotting date Aug 21, 2009
title Solution Structure And Functional Characterization Of Human Plasminogen Kringle 5
authors M.D.Battistel, A.Grishaev, S.A.An, F.J.Castellino, M.Llinas
compound source
Molecule: Plasminogen
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Plg
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: Gs115
Expression_system_variant: (Met+)
methodSolution NMR
Primary referenceSolution Structure and Functional Characterization of Human Plasminogen Kringle 5 (,)., Battistel MD, Grishaev A, An SS, Castellino FJ, Llinas M, Biochemistry. 2009 Nov 3;48(43):10208-10219. PMID:19821587
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (433 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2KNF
  • Original NMR restraints for 2KNF from PDB
  • Retrieve 2KNF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KNF from S2C, [Save to disk]
  • View 2KNF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KNF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KNF, from MSDmotif at EBI
  • Fold representative 2knf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2knf_A] [2knf]
  • SWISS-PROT database: [P00747]
  • Domain organization of [PLMN_HUMAN] by SWISSPFAM
  • Domain found in 2KNF: [KR ] by SMART
  • Other resources with information on 2KNF
  • Community annotation for 2KNF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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