2KNJ Antimicrobial Protein date Aug 26, 2009
title Nmr Structure Of Microplusin A Antimicrobial Peptide From Rhipicephalus (Boophilus) Microplus
authors J.R.Pires, C.A.Rezende, F.D.Silva, S.Daffre
compound source
Molecule: Microplusin Preprotein
Chain: A
Fragment: Unp Residues 21-110
Engineered: Yes
Organism_scientific: Rhipicephalus Microplus
Organism_common: Cattle Tick
Organism_taxid: 6941
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_variant: De3
Expression_system_vector: Prset-A
methodSolution NMR
note 2KNJ is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and mode of action of microplusin, a copper II-chelating antimicrobial peptide from the cattle tick Rhipicephalus (Boophilus) microplus., Silva FD, Rezende CA, Rossi DC, Esteves E, Dyszy FH, Schreier S, Gueiros-Filho F, Campos CB, Pires JR, Daffre S, J Biol Chem. 2009 Dec 11;284(50):34735-46. Epub 2009 Oct 14. PMID:19828445
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (345 Kb) [Save to disk]
  • Biological Unit Coordinates (2knj.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 2KNJ
  • Original NMR restraints for 2KNJ from PDB
  • Retrieve 2KNJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KNJ from S2C, [Save to disk]
  • View 2KNJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KNJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KNJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2knj_A] [2knj]
  • SWISS-PROT database: [Q86LE5]
  • Domain organization of [MPSIN_BOOMI] by SWISSPFAM
  • Other resources with information on 2KNJ
  • Community annotation for 2KNJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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