2KNX Protein Binding date Sep 07, 2009
title Solution Structure Of Complement Repeat Cr17 From Lrp-1
authors M.Guttman, E.Komives
compound source
Molecule: Prolow-Density Lipoprotein Receptor-Related Prote
Chain: A
Fragment: Residues 2770-2817
Synonym: Lrp, Alpha-2-Macroglobulin Receptor, A2mr, Apolipo Receptor, Apoer, Low-Density Lipoprotein Receptor-Related P 85 Kda Subunit, Lrp-85, Low-Density Lipoprotein Receptor-Re Protein 1 515 Kda Subunit, Lrp-515, Low-Density Lipoprotein Related Protein 1 Intracellular Domain, Lrpicd;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lrp1, A2mr, Apr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmmhb
methodSolution NMR
ligand CA enzyme
Primary referenceStructure of the Minimal Interface Between ApoE and LRP., Guttman M, Prieto JH, Handel TM, Domaille PJ, Komives EA, J Mol Biol. 2010 Mar 19. PMID:20303980
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (243 Kb) [Save to disk]
  • Biological Unit Coordinates (2knx.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 2KNX
  • CSU: Contacts of Structural Units for 2KNX
  • Original NMR restraints for 2KNX from PDB
  • Retrieve 2KNX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KNX from S2C, [Save to disk]
  • View 2KNX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KNX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KNX, from MSDmotif at EBI
  • Fold representative 2knx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2knx] [2knx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2KNX: [LDLa ] by SMART
  • Other resources with information on 2KNX
  • Community annotation for 2KNX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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