2KNY Metal Binding Protein date Sep 08, 2009
title Fusion Construct Of Cr17 From Lrp-1 And Apoe Residues 130-14
authors M.Guttman, E.A.Komives
compound source
Molecule: Lrp-1, Linker, Apo-E
Chain: A
Fragment: Fusion Of Lrp Unp Residues 2770-2817 And Apo-E Un 147-167;
Synonym: Lrp, Alpha-2-Macroglobulin Receptor, A2mr, Apolipo Receptor, Apoer, Low-Density Lipoprotein Receptor-Related P 85 Kda Subunit, Lrp-85, Low-Density Lipoprotein Receptor-Re Protein 1 515 Kda Subunit, Lrp-515, Low-Density Lipoprotein Related Protein 1 Intracellular Domain, Lrpicd;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lrp1, A2mr, Apr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-De3
Expression_system_vector: Pmmhb
methodSolution NMR
ligand CA enzyme
Primary referenceStructure of the Minimal Interface Between ApoE and LRP., Guttman M, Prieto JH, Handel TM, Domaille PJ, Komives EA, J Mol Biol. 2010 Mar 19. PMID:20303980
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (385 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2KNY
  • CSU: Contacts of Structural Units for 2KNY
  • Original NMR restraints for 2KNY from PDB
  • Retrieve 2KNY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KNY from S2C, [Save to disk]
  • View 2KNY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KNY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KNY, from MSDmotif at EBI
  • Fold representative 2kny from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kny] [2kny_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2KNY: [LDLa ] by SMART
  • Alignments of the sequence of 2KNY with the sequences similar proteins can be viewed for 2KNY's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2KNY
  • Community annotation for 2KNY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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