2KNY Metal Binding Protein date Sep 08, 2009
title Fusion Construct Of Cr17 From Lrp-1 And Apoe Residues 130-14
authors M.Guttman, E.A.Komives
compound source
Molecule: Lrp-1, Linker, Apo-E
Chain: A
Fragment: Fusion Of Lrp Unp Residues 2770-2817 And Apo-E Un 147-167;
Synonym: Lrp, Alpha-2-Macroglobulin Receptor, A2mr, Apolipo Receptor, Apoer, Low-Density Lipoprotein Receptor-Related P 85 Kda Subunit, Lrp-85, Low-Density Lipoprotein Receptor-Re Protein 1 515 Kda Subunit, Lrp-515, Low-Density Lipoprotein Related Protein 1 Intracellular Domain, Lrpicd;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lrp1, A2mr, Apr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-De3
Expression_system_vector: Pmmhb
methodSolution NMR
ligand CA enzyme
Primary referenceStructure of the Minimal Interface Between ApoE and LRP., Guttman M, Prieto JH, Handel TM, Domaille PJ, Komives EA, J Mol Biol. 2010 Mar 19. PMID:20303980
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (385 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2KNY
  • CSU: Contacts of Structural Units for 2KNY
  • Original NMR restraints for 2KNY from PDB
  • Retrieve 2KNY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KNY from S2C, [Save to disk]
  • View 2KNY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KNY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KNY, from MSDmotif at EBI
  • Fold representative 2kny from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kny] [2kny_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2KNY: [LDLa ] by SMART
  • Other resources with information on 2KNY
  • Community annotation for 2KNY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science