2KO0	Transcription Dna	date	Sep 08, 2009
title	Solution Structure Of The Thap Zinc Finger Of Thap1 In Compl Its Dna Target
authors	S.Campagne, V.Gervais, O.Saurel, A.Milon
compound		source
Molecule: Thap Domain-Containing Protein 1 Chain: A Fragment: Unp Residues 1-82 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Thap1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Expression_system_variant: De3 Expression_system_vector_type: Plasmid Expression_system_vector: Pet26
Molecule: Rrm1 Chain: B Engineered: Yes Other_details: Specific Thap1 Binding Sequence Element Foun Rrm1 Gene Promoter;		Synthetic: Yes Other_details: Dna Synthesis
Molecule: Zinc Ion Chain: C Engineered: Yes Other_details: Specific Thap1 Binding Sequence Element Foun Rrm1 Gene Promoter		Synthetic: Yes Other_details: Dna Synthesis
method	Solution NMR
ligand	ZN	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structural determinants of specific DNA-recognition by the THAP zinc finger., Campagne S, Saurel O, Gervais V, Milon A, Nucleic Acids Res. 2010 Feb 9. PMID:20144952

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (612 Kb) [Save to disk] Biological Unit Coordinates (2ko0.pdb1.gz) 40 Kb LPC: Ligand-Protein Contacts for 2KO0 CSU: Contacts of Structural Units for 2KO0 Original NMR restraints for 2KO0 from PDB Retrieve 2KO0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2KO0 from S2C, [Save to disk]

View 2KO0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2KO0

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2KO0, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ko0] [2ko0_A] [2ko0_C] [2ko0_B] SWISS-PROT database: [Q9NVV9] Domain organization of [THAP1_HUMAN] by SWISSPFAM Domains found in 2KO0: [DM3] [THAP ] by SMART

Other resources with information on 2KO0

Community annotation for 2KO0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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