2KOX Signaling Protein date Oct 02, 2009
title Nmr Residual Dipolar Couplings Identify Long Range Correlate In The Backbone Of The Protein Ubiquitin
authors R.B.Fenwick, B.Richter, D.Lee, K.F.A.Walter, D.Milovanovic, S.Bec N.A.Lakomek, C.Griesinger, X.Salvatella
compound source
Molecule: Ubiquitin
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
methodSolution NMR
Primary referenceWeak Long-Range Correlated Motions in a Surface Patch of Ubiquitin Involved in Molecular Recognition., Fenwick RB, Esteban-Martin S, Richter B, Lee D, Walter KF, Milovanovic D, Becker S, Lakomek NA, Griesinger C, Salvatella X, J Am Chem Soc. 2011 Jul 13;133(27):10336-10339. Epub 2011 Jun 20. PMID:21634390
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (14255 Kb) [Save to disk]
  • Biological Unit Coordinates (2kox.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 2KOX
  • Original NMR restraints for 2KOX from PDB
  • Retrieve 2KOX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KOX from S2C, [Save to disk]
  • View 2KOX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KOX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KOX, from MSDmotif at EBI
  • Fold representative 2kox from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kox_A] [2kox]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2KOX: [UBQ ] by SMART
  • Other resources with information on 2KOX
  • Community annotation for 2KOX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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