2KPF Membrane Protein date Oct 13, 2009
title Spatial Structure Of The Dimeric Transmembrane Domain Of Gly In Bicelles Soluton
authors K.S.Mineev, E.V.Bocharov, M.V.Goncharuk, A.S.Arseniev, P.E.Volyn R.G.Efremov
compound source
Molecule: Glycophorin-A
Chain: A, B
Fragment: Transmembrane Domain (Unp Residues 80-117)
Synonym: Pas-2, Sialoglycoprotein Alpha, Mn Sialoglycoprote
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gypa, Gpa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pgemex
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDimeric structure of the transmembrane domain of glycophorin a in lipidic and detergent environments., Mineev KS, Bocharov EV, Volynsky PE, Goncharuk MV, Tkach EN, Ermolyuk YS, Schulga AA, Chupin VV, Maslennikov IV, Efremov RG, Arseniev AS, Acta Naturae. 2011 Apr;3(2):90-8. PMID:22649687
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (421 Kb) [Save to disk]
  • Biological Unit Coordinates (2kpf.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 2KPF
  • Original NMR restraints for 2KPF from PDB
  • Retrieve 2KPF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KPF from S2C, [Save to disk]
    • View 2KPF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KPF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KPF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kpf_B] [2kpf_A] [2kpf]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2KPF
  • Community annotation for 2KPF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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