2KPK MAGI-1 PDZ1 date
authors Charbonnier, S., Nomine, Y., Ramirez, J., Luck, K., Stote, R.H., Trave, G., Kieffer, B., Atkinson, R.A.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Primary referenceThe Structural and Dynamic Response of MAGI-1 PDZ1 with Noncanonical Domain Boundaries to the Binding of Human Papillomavirus E6., Charbonnier S, Nomine Y, Ramirez J, Luck K, Chapelle A, Stote RH, Trave G, Kieffer B, Atkinson RA, J Mol Biol. 2011 Jan 13. PMID:21238461
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (658 Kb) [Save to disk]
  • Biological Unit Coordinates (2kpk.pdb1.gz) 34 Kb
  • CSU: Contacts of Structural Units for 2KPK
  • Original NMR restraints for 2KPK from PDB
  • Retrieve 2KPK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KPK from S2C, [Save to disk]
    • View 2KPK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KPK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KPK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kpk] [2kpk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2KPK: [PDZ ] by SMART
    • Other resources with information on 2KPK
  • Community annotation for 2KPK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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