2KQZ Protein Binding date Nov 25, 2009
title Solution Structure Of The Rpn13 Deubad Domain
authors X.Chen, B.Lee, D.Finley, K.J.Walters
compound source
Molecule: Proteasomal Ubiquitin Receptor Adrm1
Chain: A
Synonym: Adhesion-Regulating Molecule 1, Arm-1, 110 Kda Cel Glycoprotein, Gp110, Rpn13 Homolog, Proteasome Regulatory P Non-Atpase 13, Hrpn13;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adrm1, Gp110
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Pgex4t1
Expression_system_vector: Plasmid
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of proteasome ubiquitin receptor hRpn13 and its activation by the scaffolding protein hRpn2., Chen X, Lee BH, Finley D, Walters KJ, Mol Cell. 2010 May 14;38(3):404-15. PMID:20471946
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1329 Kb) [Save to disk]
  • Biological Unit Coordinates (2kqz.pdb1.gz) 39 Kb
  • CSU: Contacts of Structural Units for 2KQZ
  • Original NMR restraints for 2KQZ from PDB
  • Retrieve 2KQZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KQZ from S2C, [Save to disk]
  • View 2KQZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KQZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KQZ, from MSDmotif at EBI
  • Fold representative 2kqz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kqz_A] [2kqz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2KQZ
  • Community annotation for 2KQZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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