2KQZ Protein Binding date Nov 25, 2009
title Solution Structure Of The Rpn13 Deubad Domain
authors X.Chen, B.Lee, D.Finley, K.J.Walters
compound source
Molecule: Proteasomal Ubiquitin Receptor Adrm1
Chain: A
Synonym: Adhesion-Regulating Molecule 1, Arm-1, 110 Kda Cel Glycoprotein, Gp110, Rpn13 Homolog, Proteasome Regulatory P Non-Atpase 13, Hrpn13;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adrm1, Gp110
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Pgex4t1
Expression_system_vector: Plasmid
methodSolution NMR

Primary referenceStructure of proteasome ubiquitin receptor hRpn13 and its activation by the scaffolding protein hRpn2., Chen X, Lee BH, Finley D, Walters KJ, Mol Cell. 2010 May 14;38(3):404-15. PMID:20471946
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1329 Kb) [Save to disk]
  • Biological Unit Coordinates (2kqz.pdb1.gz) 39 Kb
  • CSU: Contacts of Structural Units for 2KQZ
  • Original NMR restraints for 2KQZ from PDB
  • Retrieve 2KQZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KQZ from S2C, [Save to disk]
  • View 2KQZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KQZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KQZ, from MSDmotif at EBI
  • Fold representative 2kqz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kqz_A] [2kqz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2KQZ
  • Community annotation for 2KQZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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