2KRB Translation date Dec 16, 2009
title Solution Structure Of Eif3b-Rrm Bound To Eif3j Peptide
authors L.Elantak, S.Wagner, A.Herrmannova, M.Janoskova, E.Rutkai, P.J.Lukavsky, L.Valasek
compound source
Molecule: Eukaryotic Translation Initiation Factor 3 Subunit B;
Chain: A
Fragment: Rrm Domain, Unp Residues 184-264
Synonym: Eif3b, Eukaryotic Translation Initiation Factor 3 Subunit 9, Eif-3-Eta, Eif3 P116, Eif3 P110, Prt1 Homolog, Hprt1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eif3b, Eif3s9
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pet28a

Molecule: Eukaryotic Translation Initiation Factor 3 Subunit J;
Chain: B
Fragment: Unp Residues 45-55
Synonym: Eif3j, Eukaryotic Translation Initiation Factor 3 Subunit 1, Eif-3-Alpha, Eif3 P35;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eif3j, Eif3s1, Pro0391
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pet28a
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (246 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2KRB
  • Original NMR restraints for 2KRB from PDB
  • Retrieve 2KRB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KRB from S2C, [Save to disk]
    • View 2KRB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
    • Visual 3D analysis of 2KRB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KRB, from MSDmotif at EBI
  • Fold representative 2krb from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2krb_A] [2krb_B]
  • SWISS-PROT database: [P55884] [O75822]
  • Domain organization of [EIF3B_HUMAN] [EIF3J_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2KRB with the sequences similar proteins can be viewed for 2KRB's classification [EIF3B_HUMAN] [EIF3J_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [EIF3B_HUMAN] [EIF3J_HUMAN] at ProtoMap. Click on the Cluster number.
    • Other resources with information on 2KRB
  • Community annotation for 2KRB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2010
    Bioinformatics Unit
    Weizmann Institute of Science