2KRR Nuclear Protein date Dec 22, 2009
title Solution Structure Of The Rbd1,2 Domains From Human Nucleoli
authors N.Arumugam, C.Miller, J.Maliekal, P.J.Bates, J.O.Trent, A.N.Lane
compound source
Molecule: Nucleolin
Chain: A
Fragment: Rna Binding Domains 1, 2
Synonym: Protein C23
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ncl
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta
Expression_system_vector: Pet21a
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the RBD1,2 domains from human nucleolin., Arumugam S, Miller MC, Maliekal J, Bates PJ, Trent JO, Lane AN, J Biomol NMR. 2010 May;47(1):79-83. Epub 2010 Apr 8. PMID:20376532
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (888 Kb) [Save to disk]
  • Biological Unit Coordinates (2krr.pdb1.gz) 45 Kb
  • CSU: Contacts of Structural Units for 2KRR
  • Original NMR restraints for 2KRR from PDB
  • Retrieve 2KRR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KRR from S2C, [Save to disk]
    • View 2KRR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KRR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KRR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2krr] [2krr_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2KRR: [RRM ] by SMART
    • Other resources with information on 2KRR
  • Community annotation for 2KRR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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