2KS9 Neuropeptide Receptor Neuropeptide date Dec 31, 2009
title Solution Conformation Of Substance P In Water Complexed With
authors A.Gayen, C.Mukhopadhyay
compound source
Molecule: Substance-P Receptor
Chain: A
Fragment: Unp Residues 1-364
Synonym: Spr, Nk-1 Receptor, Nk-1r, Tachykinin Receptor 1
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Substance P
Chain: B
Engineered: Yes

Synthetic: Yes
Other_details: Synthetic Peptide
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceNMR evidence of GM1-induced conformational change of Substance P using isotropic bicelles., Gayen A, Goswami SK, Mukhopadhyay C, Biochim Biophys Acta. 2010 Oct 16. PMID:20937248
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (524 Kb) [Save to disk]
  • Biological Unit Coordinates (2ks9.pdb1.gz) 105 Kb
  • CSU: Contacts of Structural Units for 2KS9
  • Original NMR restraints for 2KS9 from PDB
  • Retrieve 2KS9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KS9 from S2C, [Save to disk]
  • View 2KS9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KS9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KS9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ks9_A] [2ks9_B] [2ks9]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2KS9: [TK ] by SMART
  • Other resources with information on 2KS9
  • Community annotation for 2KS9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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