2KSB Substance P in isotropic q=0.25 DMPC/CHAPS/GM1 bicelles as a ligand for NK1R date
authors Gayen, A., Mukhopadhyay, C.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceNMR evidence of GM1-induced conformational change of Substance P using isotropic bicelles., Gayen A, Goswami SK, Mukhopadhyay C, Biochim Biophys Acta. 2010 Oct 16. PMID:20937248
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (523 Kb) [Save to disk]
  • Biological Unit Coordinates (2ksb.pdb1.gz) 105 Kb
  • CSU: Contacts of Structural Units for 2KSB
  • Original NMR restraints for 2KSB from PDB
  • Retrieve 2KSB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KSB from S2C, [Save to disk]
  • View 2KSB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KSB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KSB, from MSDmotif at EBI
  • Fold representative 2ksb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ksb_B] [2ksb_A] [2ksb]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2KSB: [TK ] by SMART
  • Other resources with information on 2KSB
  • Community annotation for 2KSB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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