2KSG Antibiotic date Jan 04, 2010
title Solution Structure Of Dermcidin-1l, A Human Antibiotic Peptide
authors H.Jung, S.Yang, J.Kim
compound source
Molecule: Dermcidin
Chain: A
Fragment: Dcd-1, Residues In Unp 63-110
Synonym: Preproteolysin, Survival-Promoting Peptide, Dcd-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dcd, Aidd, Dsep
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pet31.B
methodSolution NMR
subcellular loc. Membrane localization by OPM: Secreted
out side
in side
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (272 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2KSG
  • Original NMR restraints for 2KSG from PDB
  • Retrieve 2KSG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KSG from S2C, [Save to disk]
  • View 2KSG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KSG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KSG, from MSDmotif at EBI
  • Fold representative 2ksg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ksg_A] [2ksg]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2KSG
  • Community annotation for 2KSG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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