2KSN Signaling Protein date Jan 08, 2010
title Solution Structure Of The N-Terminal Domain Of Dc-Ubpubtd2
authors A.Song, C.Zhou, X.Guan, K.Sze, H.Hu
compound source
Molecule: Ubiquitin Domain-Containing Protein 2
Chain: A
Fragment: Unp Residues 14-141
Synonym: Dendritic Cell-Derived Ubiquitin-Like Protein, Dc- Ubiquitin-Like Protein Sb72;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ubtd2, Dcubp, Sb72
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pet-22b
methodSolution NMR
Primary referenceSolution structure of the N-terminal domain of DC-UbP/UBTD2 and its interaction with ubiquitin., Song AX, Zhou CJ, Guan X, Sze KH, Hu HY, Protein Sci. 2010 May;19(5):1104-9. PMID:20440844
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (335 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2KSN
  • Original NMR restraints for 2KSN from PDB
  • Retrieve 2KSN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KSN from S2C, [Save to disk]
  • View 2KSN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KSN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KSN, from MSDmotif at EBI
  • Fold representative 2ksn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ksn_A] [2ksn]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2KSN
  • Community annotation for 2KSN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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