2KSP Protein Binding date Jan 11, 2010
title Mechanism For The Selective Interaction Of C-Terminal Eh-Dom Proteins With Specific Npf-Containing Partners
authors F.Kieken, M.Sharma, M.Jovic, S.S.Giridharan, N.Naslavsky, S.Capla P.L.Sorgen
compound source
Molecule: Eh Domain-Containing Protein 1
Chain: A
Fragment: C-Terminal Domain (Unp Residues 435-534)
Synonym: Testilin, Hpast1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ehd1, Past, Past1, Cdabp0131
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pgex6p-2

Molecule: Mical L1 Like Peptide
Chain: B
Synonym: Molecule Interacting With Rab13, Mirab13
Engineered: Yes

Synthetic: Yes
methodSolution NMR
ligand CA enzyme
Primary referenceMechanism for the selective interaction of C-terminal EH-domain proteins with specific NPF-containing partners., Kieken F, Sharma M, Jovic M, Giridharan SS, Naslavsky N, Caplan S, Sorgen PL, J Biol Chem. 2010 Jan 27. PMID:20106972
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (359 Kb) [Save to disk]
  • Biological Unit Coordinates (2ksp.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 2KSP
  • CSU: Contacts of Structural Units for 2KSP
  • Original NMR restraints for 2KSP from PDB
  • Retrieve 2KSP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KSP from S2C, [Save to disk]
  • View 2KSP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KSP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KSP, from MSDmotif at EBI
  • Fold representative 2ksp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ksp_B] [2ksp] [2ksp_A]
  • SWISS-PROT database: [Q9H4M9] [Q8N3F8]
  • Domain organization of [EHD1_HUMAN] [MILK1_HUMAN] by SWISSPFAM
  • Domain found in 2KSP: [EH ] by SMART
  • Other resources with information on 2KSP
  • Community annotation for 2KSP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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