2KT0 Transcription Regulation date Jan 15, 2010
title Solution Structure Of Human Stem Cell Transcription Factor N Homeodomain Fragment
authors S.C.Sahu, J.L.Markley, Center For Eukaryotic Structural Genomi
compound source
Molecule: Homeobox Protein Nanog
Chain: A
Fragment: Homeobox Domain Residues 75-157
Synonym: Nanog
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pvp68k
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (482 Kb) [Save to disk]
  • Biological Unit Coordinates (2kt0.pdb1.gz) 24 Kb
  • CSU: Contacts of Structural Units for 2KT0
  • Original NMR restraints for 2KT0 from PDB
  • Retrieve 2KT0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KT0 from S2C, [Save to disk]
  • View 2KT0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KT0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KT0, from MSDmotif at EBI
  • Fold representative 2kt0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kt0_A] [2kt0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2KT0: [HOX ] by SMART
  • Other resources with information on 2KT0
  • Community annotation for 2KT0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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