2KTY Transferase date Feb 10, 2010
title Solution Structure Of Human Vaccinia Related Kinase-1
authors J.Shin, H.Yoon
compound source
Molecule: Serinethreonine-Protein Kinase Vrk1
Chain: A
Fragment: Residues 1-360
Synonym: Vaccinia-Related Kinase 1
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vrk1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pet29b
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1955 Kb) [Save to disk]
  • Biological Unit Coordinates (2kty.pdb1.gz) 99 Kb
  • CSU: Contacts of Structural Units for 2KTY
  • Original NMR restraints for 2KTY from PDB
  • Retrieve 2KTY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KTY from S2C, [Save to disk]
  • View 2KTY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KTY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KTY, from MSDmotif at EBI
  • Fold representative 2kty from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kty_A] [2kty]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 2KTY with the sequences similar proteins can be viewed for 2KTY's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2KTY
  • Community annotation for 2KTY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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