2KTY	Transferase	date	Feb 10, 2010
title	Solution Structure Of Human Vaccinia Related Kinase-1
authors	J.Shin, H.Yoon
compound		source
Molecule: Serinethreonine-Protein Kinase Vrk1 Chain: A Fragment: Residues 1-360 Synonym: Vaccinia-Related Kinase 1 Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Vrk1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Vector Expression_system_vector: Pet29b
method	Solution NMR
ligand		enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A nucleotide binding protein serine/threonine kin... protein binding ATP binding kinase activity transferase activity identical protein binding M phase of mitotic cell cycl... mitotic prophase mitotic anaphase mitotic cell cycle protein phosphorylation cell cycle mitosis mitotic nuclear envelope dis... mitotic nuclear envelope rea... phosphorylation protein autophosphorylation cell division Golgi disassembly nucleus nucleoplasm nucleolus cytoplasm Golgi stack spindle cytosol cytoskeleton

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1955 Kb) [Save to disk] Biological Unit Coordinates (2kty.pdb1.gz) 99 Kb CSU: Contacts of Structural Units for 2KTY Original NMR restraints for 2KTY from PDB Retrieve 2KTY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2KTY from S2C, [Save to disk]

View 2KTY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 2KTY

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 2KTY, from MSDmotif at EBI Fold representative 2kty from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2kty_A] SWISS-PROT database: Domain organization of by SWISSPFAM Alignments of the sequence of 2KTY with the sequences similar proteins can be viewed for 2KTY's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.

Other resources with information on 2KTY

Community annotation for 2KTY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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