2KU3 Signaling Protein date Feb 12, 2010
title Solution Structure Of Brd1 Phd1 Finger
authors S.Qin, J.Zhang, J.Wu, Y.Shi
compound source
Molecule: Bromodomain-Containing Protein 1
Chain: A
Fragment: Phd Zinc Finger Domain, Residues 208-269
Synonym: Br140-Like Protein
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brd1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Vector
Expression_system_vector: P28
methodSolution NMR
ligand ZN enzyme
note 2KU3 is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (353 Kb) [Save to disk]
  • Biological Unit Coordinates (2ku3.pdb1.gz) 18 Kb
  • LPC: Ligand-Protein Contacts for 2KU3
  • CSU: Contacts of Structural Units for 2KU3
  • Original NMR restraints for 2KU3 from PDB
  • Retrieve 2KU3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KU3 from S2C, [Save to disk]
    • View 2KU3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KU3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KU3, from MSDmotif at EBI
  • Fold representative 2ku3 from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ku3] [2ku3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2KU3: [C1] [PHD ] by SMART
    • Other resources with information on 2KU3
  • Community annotation for 2KU3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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