2KUO Metal Binding Protein date Feb 23, 2010
title Structure And Identification Of Adp-Ribose Recognition Motif And Role In The Dna Damage Response
authors G.Y.Li, R.D.Mcculloch, A.Fenton, M.Cheung, L.Meng, M.Ikura, C.A.Ko
compound source
Molecule: Aprataxin And Pnk-Like Factor
Chain: A
Fragment: Aplf Tzf
Synonym: Apurinic-Apyrimidinic Endonuclease Aplf, Pnk And A Fha Domain-Containing Protein, Xrcc1-Interacting Protein 1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aplf, Aplf(C2orf13), C2orf13, Palf, Xip1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Codon Plus
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t
methodSolution NMR
ligand ZN enzyme
note 2KUO is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (473 Kb) [Save to disk]
  • Biological Unit Coordinates (2kuo.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 2KUO
  • CSU: Contacts of Structural Units for 2KUO
  • Original NMR restraints for 2KUO from PDB
  • Retrieve 2KUO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KUO from S2C, [Save to disk]
    • View 2KUO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KUO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KUO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kuo] [2kuo_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2KUO
  • Community annotation for 2KUO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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