2KV2 Gene Regulation date Mar 04, 2010
title Solution Structure Of The Human Blm Hrdc Domain
authors Y.M.Kim, B.S.Choi
compound source
Molecule: Bloom Syndrome Protein
Chain: A
Fragment: Hrdc Domain, Unp Residues 1210-1294
Synonym: Blm, Recq Protein-Like 3, Dna Helicase, Recq-Like Recq2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Blm
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pet15b
methodSolution NMR
note 2KV2 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and function of the regulatory HRDC domain from human Bloom syndrome protein., Kim YM, Choi BS, Nucleic Acids Res. 2010 Nov 1;38(21):7764-77. Epub 2010 Jul 17. PMID:20639533
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (453 Kb) [Save to disk]
  • Biological Unit Coordinates (2kv2.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 2KV2
  • Original NMR restraints for 2KV2 from PDB
  • Retrieve 2KV2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KV2 from S2C, [Save to disk]
  • View 2KV2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KV2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KV2, from MSDmotif at EBI
  • Fold representative 2kv2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kv2] [2kv2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2KV2: [HRDC ] by SMART
  • Other resources with information on 2KV2
  • Community annotation for 2KV2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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