2KV2 Gene Regulation date Mar 04, 2010
title Solution Structure Of The Human Blm Hrdc Domain
authors Y.M.Kim, B.S.Choi
compound source
Molecule: Bloom Syndrome Protein
Chain: A
Fragment: Hrdc Domain, Unp Residues 1210-1294
Synonym: Blm, Recq Protein-Like 3, Dna Helicase, Recq-Like Recq2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Blm
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pet15b
methodSolution NMR
note 2KV2 is a representative structure
Primary referenceStructure and function of the regulatory HRDC domain from human Bloom syndrome protein., Kim YM, Choi BS, Nucleic Acids Res. 2010 Nov 1;38(21):7764-77. Epub 2010 Jul 17. PMID:20639533
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (453 Kb) [Save to disk]
  • Biological Unit Coordinates (2kv2.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 2KV2
  • Original NMR restraints for 2KV2 from PDB
  • Retrieve 2KV2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KV2 from S2C, [Save to disk]
  • View 2KV2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KV2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KV2, from MSDmotif at EBI
  • Fold representative 2kv2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kv2] [2kv2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2KV2: [HRDC ] by SMART
  • Alignments of the sequence of 2KV2 with the sequences similar proteins can be viewed for 2KV2's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2KV2
  • Community annotation for 2KV2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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