2KWO Metal Binding Protein date Apr 14, 2010
title Solution Structure Of The Double Phd (Plant Homeodomain) Fin Human Transcriptional Protein Dpf3b Bound To A Histone H4 P Containing N-Terminal Acetylation At Serine 1
authors L.Zeng, Q.Zhang, S.Li, A.N.Plotnikov, M.J.Walsh, M.Zhou
compound source
Molecule: Histone Peptide
Chain: B
Engineered: Yes
Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized

Molecule: Zinc Finger Protein Dpf3
Chain: A
Fragment: Phd-Types 1 And 2 Residues 261-372
Synonym: Zinc Finger Protein Cer-D4, Brg1-Associated Factor Baf45c;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dpf3, Baf45c, Cerd4
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
methodSolution NMR
ligand SAC, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceMechanism and regulation of acetylated histone binding by the tandem PHD finger of DPF3b., Zeng L, Zhang Q, Li S, Plotnikov AN, Walsh MJ, Zhou MM, Nature. 2010 Jul 8;466(7303):258-62. PMID:20613843
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (669 Kb) [Save to disk]
  • Biological Unit Coordinates (2kwo.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 2KWO
  • CSU: Contacts of Structural Units for 2KWO
  • Original NMR restraints for 2KWO from PDB
  • Retrieve 2KWO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KWO from S2C, [Save to disk]
  • View 2KWO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KWO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KWO, from MSDmotif at EBI
  • Fold representative 2kwo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kwo_B] [2kwo_A] [2kwo]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2KWO: [PHD] [RING ] by SMART
  • Other resources with information on 2KWO
  • Community annotation for 2KWO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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