2KY5 Cell Adhesion date May 14, 2010
title Solution Structure Of The Pecam-1 Cytoplasmic Tail With Dpc
authors B.L.Lytle, F.C.Peterson, B.F.Volkman, C.Paddock, D.K.Newman, Cent Eukaryotic Structural Genomics (Cesg)
compound source
Molecule: Platelet Endothelial Cell Adhesion Molecule
Chain: A
Fragment: Sequence Database Residues 685-737
Synonym: Pecam-1, Endocam, Gpiia', Peca1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pecam-1, Pecam1
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21[Prep4]
Expression_system_vector: Pqe30t
methodSolution NMR
note 2KY5 is a representative structure
subcellular loc. Membrane localization by OPM: Eukaryotic plasma membrane
extracellular side
cytoplasmic side
Primary referenceResidues within a lipid-associated segment of the PECAM-1 cytoplasmic domain are susceptible to inducible, sequential phosphorylation., Paddock C, Lytle BL, Peterson FC, Holyst T, Newman PJ, Volkman BF, Newman DK, Blood. 2011 Apr 4. PMID:21464369
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (200 Kb) [Save to disk]
  • Biological Unit Coordinates (2ky5.pdb1.gz) 11 Kb
  • CSU: Contacts of Structural Units for 2KY5
  • Original NMR restraints for 2KY5 from PDB
  • Retrieve 2KY5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KY5 from S2C, [Save to disk]
  • View 2KY5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KY5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KY5, from MSDmotif at EBI
  • Fold representative 2ky5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ky5_A] [2ky5]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 2KY5 with the sequences similar proteins can be viewed for 2KY5's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2KY5
  • Community annotation for 2KY5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science