2KY5 Cell Adhesion date May 14, 2010
title Solution Structure Of The Pecam-1 Cytoplasmic Tail With Dpc
authors B.L.Lytle, F.C.Peterson, B.F.Volkman, C.Paddock, D.K.Newman, Cent Eukaryotic Structural Genomics (Cesg)
compound source
Molecule: Platelet Endothelial Cell Adhesion Molecule
Chain: A
Fragment: Sequence Database Residues 685-737
Synonym: Pecam-1, Endocam, Gpiia', Peca1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pecam-1, Pecam1
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21[Prep4]
Expression_system_vector: Pqe30t
methodSolution NMR
note 2KY5 is a representative structure
subcellular loc. Membrane localization by OPM: Eukaryotic plasma membrane
extracellular side
cytoplasmic side
Primary referenceResidues within a lipid-associated segment of the PECAM-1 cytoplasmic domain are susceptible to inducible, sequential phosphorylation., Paddock C, Lytle BL, Peterson FC, Holyst T, Newman PJ, Volkman BF, Newman DK, Blood. 2011 Apr 4. PMID:21464369
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (200 Kb) [Save to disk]
  • Biological Unit Coordinates (2ky5.pdb1.gz) 11 Kb
  • CSU: Contacts of Structural Units for 2KY5
  • Original NMR restraints for 2KY5 from PDB
  • Retrieve 2KY5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KY5 from S2C, [Save to disk]
  • View 2KY5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KY5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KY5, from MSDmotif at EBI
  • Fold representative 2ky5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ky5_A] [2ky5]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2KY5
  • Community annotation for 2KY5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science