2KY6 Transcription Regulator date May 14, 2010
title Structure Of Arc92vbdmed25acid
authors A.G.Milbradt, Z.J.Sun, P.Selenko, K.Takeuchi, A.M.Naar, G.Wagner
compound source
Molecule: Mediator Of Rna Polymerase II Transcription Subun
Chain: A
Fragment: Vp16-Binding-Domain (Vbd) Activator-Interacting D (Acid) (Unp Residues 391-553);
Synonym: Mediator Complex Subunit 25, Activator-Recruited C Kda Component, Arc92, Activator Interaction Domain-Containi 1, P78;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Med25, Acid1, Arc92, Ptov2, Tcbap0758
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: P-His-Parallel
Other_details: His-Gb1-Tev-Tag
methodSolution NMR
Primary referenceStructure of the VP16 transactivator target in the Mediator., Milbradt AG, Kulkarni M, Yi T, Takeuchi K, Sun ZY, Luna RE, Selenko P, Naar AM, Wagner G, Nat Struct Mol Biol. 2011 Apr;18(4):410-5. Epub 2011 Mar 6. PMID:21378963
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1313 Kb) [Save to disk]
  • Biological Unit Coordinates (2ky6.pdb1.gz) 53 Kb
  • CSU: Contacts of Structural Units for 2KY6
  • Original NMR restraints for 2KY6 from PDB
  • Retrieve 2KY6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KY6 from S2C, [Save to disk]
  • View 2KY6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KY6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KY6, from MSDmotif at EBI
  • Fold representative 2ky6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ky6_A] [2ky6]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2KY6
  • Community annotation for 2KY6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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