2KYG Protein Binding date May 25, 2010
title Structure Of The Aml1-Eto Nervy Domain - Pka(Riia) Complex A Contribution To Aml1-Eto Activity
authors T.A.Corpora, T.Cierpecki, J.Bushweller
compound source
Molecule: Camp-Dependent Protein Kinase Type II-Alpha Regul Subunit;
Chain: A, B
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prkar2a, Pkr2, Prkar2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Plasmid
Expression_system_plasmid: Phis Parallel 2

Molecule: Protein Cbfa2t1
Chain: C
Synonym: Protein Mtg8, Protein Eto, Eight Twenty One Protei D-Related Protein, Zinc Finger Mynd Domain-Containing Prote
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Runx1t1, Aml1t1, Cbfa2t1, Cdr, Eto, Mtg8, Zmynd2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Plasmid
Expression_system_plasmid: Pet-32a
methodSolution NMR
note 2KYG is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
C


Primary referenceStructure of the AML1-ETO NHR3-PKA(RIIalpha) complex and its contribution to AML1-ETO activity., Corpora T, Roudaia L, Oo ZM, Chen W, Manuylova E, Cai X, Chen MJ, Cierpicki T, Speck NA, Bushweller JH, J Mol Biol. 2010 Sep 24;402(3):560-77. Epub 2010 Aug 11. PMID:20708017
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (530 Kb) [Save to disk]
  • Biological Unit Coordinates (2kyg.pdb1.gz) 36 Kb
  • CSU: Contacts of Structural Units for 2KYG
  • Original NMR restraints for 2KYG from PDB
  • Retrieve 2KYG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KYG from S2C, [Save to disk]
    • View 2KYG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KYG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KYG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kyg_C] [2kyg_A] [2kyg_B] [2kyg]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2KYG: [RIIa ] by SMART
    • Other resources with information on 2KYG
  • Community annotation for 2KYG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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