2KYU Transferase date Jun 08, 2010
title The Solution Structure Of The Phd3 Finger Of Mll
authors S.Park, J.H.Bushweller
compound source
Molecule: Histone-Lysine N-Methyltransferase Mll
Chain: A
Fragment: Phd3 Finger (Unp Residues 1564-1628)
Synonym: Zinc Finger Protein Hrx, All-1, Trithorax-Like Pro Lysine N-Methyltransferase 2a, Kmt2a, Cxxc-Type Zinc Finger 7;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mll, All1, Cxxc7, Hrx, Htrx, Kmt2a, Mll1, Trx1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Ge Healthcare
methodSolution NMR
ligand ZN enzyme
note 2KYU is a representative structure
Primary referenceThe PHD3 domain of MLL acts as a CYP33-regulated switch between MLL-mediated activation and repression ., Park S, Osmers U, Raman G, Schwantes RH, Diaz MO, Bushweller JH, Biochemistry. 2010 Aug 10;49(31):6576-86. PMID:20677832
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (172 Kb) [Save to disk]
  • Biological Unit Coordinates (2kyu.pdb1.gz) 18 Kb
  • LPC: Ligand-Protein Contacts for 2KYU
  • CSU: Contacts of Structural Units for 2KYU
  • Original NMR restraints for 2KYU from PDB
  • Retrieve 2KYU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KYU from S2C, [Save to disk]
  • View 2KYU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KYU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KYU, from MSDmotif at EBI
  • Fold representative 2kyu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kyu] [2kyu_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2KYU: [PHD ] by SMART
  • Other resources with information on 2KYU
  • Community annotation for 2KYU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science