2KYX Isomerase date Jun 09, 2010
title Solution Structure Of The Rrm Domain Of Cyp33
authors S.Park, J.H.Bushweller
compound source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase E
Chain: A
Fragment: Unp Residues 3-83
Synonym: Ppiase E, Rotamase E, Cyclophilin E, Cyclophilin-3
Ec: 5.2.1.8
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ppie, Cyp33
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_vector: Pgex 4t
methodSolution NMR
ligand
enzyme Isomerase E.C.5.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe PHD3 domain of MLL acts as a CYP33-regulated switch between MLL-mediated activation and repression ., Park S, Osmers U, Raman G, Schwantes RH, Diaz MO, Bushweller JH, Biochemistry. 2010 Aug 10;49(31):6576-86. PMID:20677832
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (210 Kb) [Save to disk]
  • Biological Unit Coordinates (2kyx.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 2KYX
  • Original NMR restraints for 2KYX from PDB
  • Retrieve 2KYX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KYX from S2C, [Save to disk]
    • View 2KYX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KYX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KYX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kyx] [2kyx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2KYX: [RRM ] by SMART
    • Other resources with information on 2KYX
  • Community annotation for 2KYX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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