2KZS Apoptosis date Jun 23, 2010
title Daxx Helical Bundle (Dhb) Domain
authors E.Escobar-Cabrera, D.K.W.Lau, S.Giovinazzi, A.M.Ishov, L.P.Mcint
compound source
Molecule: Death-Associated Protein 6
Chain: A
Fragment: Unp Residues 55 To 144
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Daxx, Dadb-159g18.9-007, Damc-227d19.15-007, Daqb-126 Xxbac-Bcx165d10.3-007, Xxbac-Bpg185d15.6-007;
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector: Pet28a
Other_details: Cloned Into Pet28a From A Human Cdna Library Ndei And Xhoi
methodSolution NMR
Primary referenceStructural Characterization of the DAXX N-Terminal Helical Bundle Domain and Its Complex with Rassf1C., Escobar-Cabrera E, Lau DK, Giovinazzi S, Ishov AM, McIntosh LP, Structure. 2010 Dec 8;18(12):1642-53. PMID:21134643
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (717 Kb) [Save to disk]
  • Biological Unit Coordinates (2kzs.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 2KZS
  • Original NMR restraints for 2KZS from PDB
  • Retrieve 2KZS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KZS from S2C, [Save to disk]
  • View 2KZS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KZS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KZS, from MSDmotif at EBI
  • Fold representative 2kzs from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kzs] [2kzs_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 2KZS with the sequences similar proteins can be viewed for 2KZS's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2KZS
  • Community annotation for 2KZS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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