2KZT Apoptosis date Jun 24, 2010
title Structure Of The Tandem Ma-3 Region Of Pdcd4
authors L.C.Waters, S.L.Strong, O.Oka, F.W.Muskett, V.Veverka, S.Banerjee T.Schmedt, A.J.Henry, K.H.Klempnauer, M.D.Carr
compound source
Molecule: Programmed Cell Death Protein 4
Chain: A
Fragment: Ma-3 Region, Residues 157-318
Synonym: Pdcd4, Nuclear Antigen H731-Like, Neoplastic Trans Inhibitor Protein, Protein 19715a;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Vector
Expression_system_vector: Pgex-6p-2

Molecule: Programmed Cell Death Protein 4
Chain: B
Fragment: Ma-3 Region, Residues 319-449
Synonym: Pdcd4, Topoisomerase-Inhibitor Suppressed Protein, Ma-3;
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Vector
Expression_system_vector: Pgex-6p-2
methodSolution NMR
Primary referenceStructure of the tandem MA-3 region of Pdcd4 protein and characterization of its interactions with eIF4A and eIF4G: molecular mechanisms of a tumor suppressor., Waters LC, Strong SL, Ferlemann E, Oka O, Muskett FW, Veverka V, Banerjee S, Schmedt T, Henry AJ, Klempnauer KH, Carr MD, J Biol Chem. 2011 May 13;286(19):17270-80. Epub 2011 Mar 16. PMID:21454508
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3437 Kb) [Save to disk]
  • Biological Unit Coordinates (2kzt.pdb1.gz) 48 Kb
  • CSU: Contacts of Structural Units for 2KZT
  • Original NMR restraints for 2KZT from PDB
  • Retrieve 2KZT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KZT from S2C, [Save to disk]
  • View 2KZT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KZT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KZT, from MSDmotif at EBI
  • Fold representative 2kzt from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kzt_B] [2kzt_A] [2kzt]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2KZT: [MA3 ] by SMART
  • Other resources with information on 2KZT
  • Community annotation for 2KZT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science