2KZT Structure of the Tandem MA-3 Region of Pdcd4 date
authors Waters, L.C., Strong, S.L., Oka, O., Muskett, F.W., Veverka, V., Banerjee, S., Schmedt, T., Henry, A.J., Klempnauer, K.H., Carr, M.D.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the tandem MA-3 region of Pdcd4 protein and characterization of its interactions with eIF4A and eIF4G: molecular mechanisms of a tumor suppressor., Waters LC, Strong SL, Ferlemann E, Oka O, Muskett FW, Veverka V, Banerjee S, Schmedt T, Henry AJ, Klempnauer KH, Carr MD, J Biol Chem. 2011 May 13;286(19):17270-80. Epub 2011 Mar 16. PMID:21454508
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3437 Kb) [Save to disk]
  • Biological Unit Coordinates (2kzt.pdb1.gz) 48 Kb
  • CSU: Contacts of Structural Units for 2KZT
  • Original NMR restraints for 2KZT from PDB
  • Retrieve 2KZT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KZT from S2C, [Save to disk]
    • View 2KZT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KZT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KZT, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kzt_B] [2kzt_A] [2kzt]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2KZT: [MA3 ] by SMART
    • Other resources with information on 2KZT
  • Community annotation for 2KZT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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