2KZU Apoptosis date Jun 25, 2010
title Daxx Helical Bundle (Dhb) Domain Rassf1c Complex
authors E.Escobar-Cabrera, D.K.W.Lau, S.Giovinazzi, A.M.Ishov, L.P.Mcint
compound source
Molecule: Death-Associated Protein 6
Chain: A
Fragment: Unp Residues 55 To 144
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Daxx, Dadb-159g18.9-007, Damc-227d19.15-007, Daqb-126 Xxbac-Bcx165d10.3-007, Xxbac-Bpg185d15.6-007;
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector: Pgex-2t
Other_details: Cloned With Bamhi Ecori

Molecule: Ras Association (Ralgdsaf-6) Domain Family 1
Chain: B
Fragment: Unp Residues 23 To 38
Synonym: Ras Association (Ralgdsaf-6) Domain Family 1, Iso Cra_a;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rassf1, Hcg_17462
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
note 2KZU is a representative structure
Gene HCG
Primary referenceStructural Characterization of the DAXX N-Terminal Helical Bundle Domain and Its Complex with Rassf1C., Escobar-Cabrera E, Lau DK, Giovinazzi S, Ishov AM, McIntosh LP, Structure. 2010 Dec 8;18(12):1642-53. PMID:21134643
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (855 Kb) [Save to disk]
  • Biological Unit Coordinates (2kzu.pdb1.gz) 35 Kb
  • CSU: Contacts of Structural Units for 2KZU
  • Original NMR restraints for 2KZU from PDB
  • Retrieve 2KZU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KZU from S2C, [Save to disk]
  • View 2KZU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KZU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KZU, from MSDmotif at EBI
  • Fold representative 2kzu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kzu_A] [2kzu_B] [2kzu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2KZU
  • Community annotation for 2KZU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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