2L0S Blood Clotting date Jul 15, 2010
title Solution Structure Of Human Plasminogen Kringle 3
authors M.T.Christen, P.Frank, J.Schaller, M.Llinas
compound source
Molecule: Plasminogen
Chain: A
Fragment: Unp Residues 272-354, Kringle 3 Domain
Ec: 3.4.21.7
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Plg
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: M15
Expression_system_vector: Pqe-8
Other_details: Expressed In 15n-Labeled M9 Minimal Medium
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.4.21.7 BRENDA
Primary referenceHuman Plasminogen Kringle 3: Solution Structure, Functional Insights, Phylogenetic Landscape., Christen MT, Frank P, Schaller J, Llinas M, Biochemistry. 2010 Jul 9. PMID:20617841
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (434 Kb) [Save to disk]
  • Biological Unit Coordinates (2l0s.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 2L0S
  • Original NMR restraints for 2L0S from PDB
  • Retrieve 2L0S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2L0S from S2C, [Save to disk]
  • View 2L0S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2L0S
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2L0S, from MSDmotif at EBI
  • Fold representative 2l0s from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2l0s_A] [2l0s]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2L0S: [KR ] by SMART
  • Alignments of the sequence of 2L0S with the sequences similar proteins can be viewed for 2L0S's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2L0S
  • Community annotation for 2L0S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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