2L29 Transport Protein date Aug 13, 2010
title Complex Structure Of E4 Mutant Human Igf2r Domain 11 Bound T
authors C.Williams, H.Hoppe, D.Rezgui, M.Strickland, S.Frago, R.Z.Ellis, P Amorn, S.N.Prince, O.J.Zaccheo, B.Forbes, E.Y.Jones, M.P.Crump, A
compound source
Molecule: Insulin-Like Growth Factor 2 Receptor Variant
Chain: A
Fragment: Domain 11, Residues 1431-1570
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet26a

Molecule: Insulin-Like Growth Factor II
Chain: B
Fragment: Residues 25-91
Synonym: Igf-II, Somatomedin-A, Insulin-Like Growth Factor Del, Preptin;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Igf2, Pp1446
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm101
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgem-Teasy
methodSolution NMR
Primary referenceAn exon splice enhancer primes IGF2:IGF2R binding site structure and function evolution., Williams C, Hoppe HJ, Rezgui D, Strickland M, Forbes BE, Grutzner F, Frago S, Ellis RZ, Wattana-Amorn P, Prince SN, Zaccheo OJ, Nolan CM, Mungall AJ, Jones EY, Crump MP, Hassan AB, Science. 2012 Nov 30;338(6111):1209-13. doi: 10.1126/science.1228633. PMID:23197533
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1184 Kb) [Save to disk]
  • Biological Unit Coordinates (2l29.pdb1.gz) 60 Kb
  • CSU: Contacts of Structural Units for 2L29
  • Original NMR restraints for 2L29 from PDB
  • Retrieve 2L29 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2L29 from S2C, [Save to disk]
  • View 2L29 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2L29
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2L29, from MSDmotif at EBI
  • Fold representative 2l29 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2l29_A] [2l29] [2l29_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2L29: [IlGF ] by SMART
  • Alignments of the sequence of 2L29 with the sequences similar proteins can be viewed for 2L29's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2L29
  • Community annotation for 2L29 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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