2L3R Dna Binding Protein Gene Regulation date Sep 21, 2010
title Nmr Structure Of Uhrf1 Tandem Tudor Domains In A Complex Wit H3 Peptide
authors N.Nady, A.Lemak, C.Fares, A.Gutmanas, G.Avvakumov, S.Xue, C.Arrows Structural Genomics Consortium (Sgc)
compound source
Molecule: E3 Ubiquitin-Protein Ligase Uhrf1
Chain: A
Fragment: Unp Residues 126-285
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Uhrf1, Icbp90, Np95, Rnf106
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a

Molecule: Histone H3
Chain: B
Engineered: Yes
Synthetic: Yes
Organism_common: Synthetic
Organism_taxid: 32630
methodSolution NMR
ligand M3L enzyme
Primary referenceRecognition of multivalent histone states associated with heterochromatin by UHRF1., Nady N, Lemak A, Walker JR, Avvakumov GV, Kareta MS, Achour M, Xue S, Duan S, Allali-Hassani A, Zuo X, Wang YX, Bronner C, Chedin F, Arrowsmith CH, Dhe-Paganon S, J Biol Chem. 2011 Apr 13. PMID:21489993
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (702 Kb) [Save to disk]
  • Biological Unit Coordinates (2l3r.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 2L3R
  • CSU: Contacts of Structural Units for 2L3R
  • Original NMR restraints for 2L3R from PDB
  • Retrieve 2L3R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2L3R from S2C, [Save to disk]
    • View 2L3R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2L3R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2L3R, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2l3r] [2l3r_A] [2l3r_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2L3R
  • Community annotation for 2L3R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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