2L41 Rna Binding Protein Rna date Sep 28, 2010
title Nab3 Rrm - Ucuu Complex
authors R.Stefl, R.Pergoli, F.Hobor, K.Kubicek, M.Zimmermann, J.Pasulka, C
compound source
Molecule: Rrm Domain From Nuclear Polyadenylated Rna-Bindin 3;
Chain: A
Synonym: Rrm Domain From Nab3
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Gene: Nab3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pet22b

Molecule: Rna (5'-R(Pupcpupu)-3')
Chain: B
Engineered: Yes

Synthetic: Yes
methodSolution NMR

Primary referenceRecognition of transcription termination signal by the nuclear polyadenylated RNA-binding (NAB) 3 protein., Hobor F, Pergoli R, Kubicek K, Hrossova D, Bacikova V, Zimmermann M, Pasulka J, Hofr C, Vanacova S, Stefl R, J Biol Chem. 2011 Feb 4;286(5):3645-57. Epub 2010 Nov 17. PMID:21084293
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (462 Kb) [Save to disk]
  • Biological Unit Coordinates (2l41.pdb1.gz) 24 Kb
  • CSU: Contacts of Structural Units for 2L41
  • Original NMR restraints for 2L41 from PDB
  • Retrieve 2L41 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2L41 from S2C, [Save to disk]
  • View 2L41 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2L41
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2L41, from MSDmotif at EBI
  • Fold representative 2l41 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2l41_A] [2l41] [2l41_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2L41: [RRM ] by SMART
  • Other resources with information on 2L41
  • Community annotation for 2L41 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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