2L4D cytochrome c domain of pp3183 protein from Pseudomonas putida date
authors Banci, L., Bertini, I., Ciofi-Baffoni, S., Kozyreva, T., Mori, M., Wang, S.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand HEC enzyme
note 2L4D is a representative structure
Gene PP
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSco proteins are involved in electron transfer processes., Banci L, Bertini I, Ciofi-Baffoni S, Kozyreva T, Mori M, Wang S, J Biol Inorg Chem. 2010 Dec 23. PMID:21181421
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (663 Kb) [Save to disk]
  • Biological Unit Coordinates (2l4d.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 2L4D
  • CSU: Contacts of Structural Units for 2L4D
  • Original NMR restraints for 2L4D from PDB
  • Retrieve 2L4D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2L4D from S2C, [Save to disk]
    • View 2L4D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2L4D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2L4D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2l4d_A] [2l4d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2L4D
  • Community annotation for 2L4D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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