2L5J Splicing date Nov 02, 2010
title Structure Of The Spliceosomal Phosphopeptide P140 (Phosphory Form)
authors M.Quinternet, N.Page, N.Schall, J.Strub, O.Chaloin, M.Decossas, M. A.Van Dorsselaer, J.Briand, S.Muller
compound source
Molecule: U1 Small Nuclear Ribonucleoprotein 70 Kda
Chain: A
Fragment: Unp Residues 131-151
Synonym: U1 Snrnp 70 Kda, U1-70k, Snrnp70
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
ligand SEP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe spliceosomal phosphopeptide P140 controls the lupus disease by interacting with the HSC70 protein and via a mechanism mediated by gammadelta T cells., Page N, Schall N, Strub JM, Quinternet M, Chaloin O, Decossas M, Cung MT, Van Dorsselaer A, Briand JP, Muller S, PLoS One. 2009;4(4):e5273. Epub 2009 Apr 23. PMID:19390596
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (2l5j.pdb1.gz) 7 Kb
  • LPC: Ligand-Protein Contacts for 2L5J
  • CSU: Contacts of Structural Units for 2L5J
  • Original NMR restraints for 2L5J from PDB
  • Retrieve 2L5J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2L5J from S2C, [Save to disk]
  • View 2L5J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2L5J
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2L5J, from MSDmotif at EBI
  • Fold representative 2l5j from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2l5j_A] [2l5j]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2L5J
  • Community annotation for 2L5J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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