2L5U Structure of the first PHD finger (PHD1) from CHD4 (Mi2b) date
authors Mansfield, R.E., Kwan, A.H., Mackay, J.P.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe plant homeodomain (PHD) fingers of CHD4 are histone H3-binding modules with preference for unmodified H3K4 and methylated H3K9., Mansfield RE, Musselman CA, Kwan AH, Garske AL, Davrazou F, Denu JM, Kutateladze TG, Mackay JP, J Biol Chem. 2011 Jan 28. PMID:21278251
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (303 Kb) [Save to disk]
  • Biological Unit Coordinates (2l5u.pdb1.gz) 16 Kb
  • LPC: Ligand-Protein Contacts for 2L5U
  • CSU: Contacts of Structural Units for 2L5U
  • Original NMR restraints for 2L5U from PDB
  • Retrieve 2L5U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2L5U from S2C, [Save to disk]
    • View 2L5U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2L5U
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2L5U, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2l5u] [2l5u_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2L5U: [PHD] [RING ] by SMART
    • Other resources with information on 2L5U
  • Community annotation for 2L5U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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