2L6A Signaling Protein date Nov 17, 2010
title Three-Dimensional Structure Of The N-Terminal Effector Pyrin Nlrp12
authors A.S.Pinheiro, W.Peti
compound source
Molecule: Nacht, Lrr And Pyd Domains-Containing Protein 12
Chain: A
Fragment: Unp Residues 1-98
Synonym: Monarch-1, Pyrin-Containing Apaf1-Like Protein 7, By Nitric Oxide;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nlrp12, Nalp12, Pypaf7, Rno
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)-Ril
Expression_system_vector: Phis Parallel Stop
methodSolution NMR
Primary referenceThe NLRP12 Pyrin Domain: Structure, Dynamics, and Functional Insights., Pinheiro AS, Eibl C, Ekman-Vural Z, Schwarzenbacher R, Peti W, J Mol Biol. 2011 Nov 4;413(4):790-803. Epub 2011 Sep 28. PMID:21978668
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (534 Kb) [Save to disk]
  • Biological Unit Coordinates (2l6a.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 2L6A
  • Original NMR restraints for 2L6A from PDB
  • Retrieve 2L6A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2L6A from S2C, [Save to disk]
    • View 2L6A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2L6A
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2L6A, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2l6a_A] [2l6a]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2L6A: [PYRIN ] by SMART
    • Other resources with information on 2L6A
  • Community annotation for 2L6A at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science