2L6W Membrane Protein date Nov 29, 2010
title Pdgfr Beta-Tm
authors C.Muhle-Goll, S.Hoffmann, A.S.Ulrich
compound source
Molecule: Beta-Type Platelet-Derived Growth Factor Receptor
Chain: A, B
Fragment: Unp Residues 526-563
Synonym: Pdgf-R-Beta, Cd140 Antigen-Like Family Member B
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pdgfrb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl 21
Expression_system_vector: Pmmhb
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.10.1 BRENDA
subcellular loc. Membrane localization by OPM: Eukaryotic plasma membrane
extracellular side
cytoplasmic side
Primary referenceHydrophobic matching controls the tilt and stability of the dimeric platelet-derived growth factor receptor (PDGFR) beta transmembrane segment., Muhle-Goll C, Hoffmann S, Afonin S, Grage SL, Polyansky AA, Windisch D, Zeitler M, Burck J, Ulrich AS, J Biol Chem. 2012 Jul 27;287(31):26178-86. doi: 10.1074/jbc.M111.325555. Epub, 2012 May 22. PMID:22619173
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (454 Kb) [Save to disk]
  • Biological Unit Coordinates (2l6w.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 2L6W
  • Original NMR restraints for 2L6W from PDB
  • Retrieve 2L6W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2L6W from S2C, [Save to disk]
  • View 2L6W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2L6W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2L6W, from MSDmotif at EBI
  • Fold representative 2l6w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2l6w_A] [2l6w] [2l6w_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2L6W
  • Community annotation for 2L6W at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science