2L6W Membrane Protein date Nov 29, 2010
title Pdgfr Beta-Tm
authors C.Muhle-Goll, S.Hoffmann, A.S.Ulrich
compound source
Molecule: Beta-Type Platelet-Derived Growth Factor Receptor
Chain: A, B
Fragment: Unp Residues 526-563
Synonym: Pdgf-R-Beta, Cd140 Antigen-Like Family Member B
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pdgfrb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl 21
Expression_system_vector: Pmmhb
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.10.1 BRENDA
subcellular loc. Membrane localization by OPM: Eukaryotic plasma membrane
extracellular side
cytoplasmic side
Primary referenceHydrophobic matching controls the tilt and stability of the dimeric platelet-derived growth factor receptor (PDGFR) beta transmembrane segment., Muhle-Goll C, Hoffmann S, Afonin S, Grage SL, Polyansky AA, Windisch D, Zeitler M, Burck J, Ulrich AS, J Biol Chem. 2012 Jul 27;287(31):26178-86. doi: 10.1074/jbc.M111.325555. Epub, 2012 May 22. PMID:22619173
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (454 Kb) [Save to disk]
  • Biological Unit Coordinates (2l6w.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 2L6W
  • Original NMR restraints for 2L6W from PDB
  • Retrieve 2L6W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2L6W from S2C, [Save to disk]
  • View 2L6W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2L6W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2L6W, from MSDmotif at EBI
  • Fold representative 2l6w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2l6w_A] [2l6w] [2l6w_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 2L6W with the sequences similar proteins can be viewed for 2L6W's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2L6W
  • Community annotation for 2L6W at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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