2L7Z Gene Regulation date Dec 27, 2010
title Nmr Structure Of A13 Homedomain
authors J.Ames
compound source
Molecule: Homeobox Protein Hox-A13
Chain: A
Fragment: Homeobox Domain Residues 322-388
Synonym: Homeobox Protein Hox-1j
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hoxa13, Hox1j
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet23
methodSolution NMR
Primary referenceStructural basis for sequence specific DNA binding and protein dimerization of HOXA13., Zhang Y, Larsen CA, Stadler HS, Ames JB, PLoS One. 2011;6(8):e23069. Epub 2011 Aug 1. PMID:21829694
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (328 Kb) [Save to disk]
  • Biological Unit Coordinates (2l7z.pdb1.gz) 22 Kb
  • CSU: Contacts of Structural Units for 2L7Z
  • Original NMR restraints for 2L7Z from PDB
  • Retrieve 2L7Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2L7Z from S2C, [Save to disk]
  • View 2L7Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2L7Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2L7Z, from MSDmotif at EBI
  • Fold representative 2l7z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2l7z] [2l7z_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2L7Z: [HOX ] by SMART
  • Other resources with information on 2L7Z
  • Community annotation for 2L7Z at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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