2L87 Signaling Protein date Jan 06, 2011
title The 27-Residue N-Terminus Ccr5-Peptide In A Ternary Complex Gp120 And A Cd4-Mimic Peptide
authors E.Schnur, E.Noah, I.Ayzenshtat, H.Sargsyan, T.Inui, F.X.Ding, B.Ar Y.Sagi, N.Kessler, R.Levy, T.Scherf, F.Naider, J.Anglister
compound source
Molecule: C-C Chemokine Receptor Type 5
Chain: A
Fragment: N-Terminal Domain, Residues 1-27
Synonym: Ccr5, C-C Ckr-5, Cc-Ckr-5, Ccr5, Chemr13, Hiv-1 Fu Coreceptor;
Engineered: Yes
Mutation: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Chemical Synthesis
methodSolution NMR
ligand TYS enzyme
Primary referenceThe Conformation and Orientation of a 27-Residue CCR5 Peptide in a Ternary Complex with HIV-1 gp120 and a CD4-Mimic Peptide., Schnur E, Noah E, Ayzenshtat I, Sargsyan H, Inui T, Ding FX, Arshava B, Sagi Y, Kessler N, Levy R, Scherf T, Naider F, Anglister J, J Mol Biol. 2011 Jul 29;410(5):778-97. PMID:21763489
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (2l87.pdb1.gz) 5 Kb
  • LPC: Ligand-Protein Contacts for 2L87
  • CSU: Contacts of Structural Units for 2L87
  • Original NMR restraints for 2L87 from PDB
  • Retrieve 2L87 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2L87 from S2C, [Save to disk]
  • View 2L87 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2L87
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2L87, from MSDmotif at EBI
  • Fold representative 2l87 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2l87_A] [2l87]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2L87
  • Community annotation for 2L87 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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