2LAJ Ligase Transcription Regulator date Mar 16, 2011
title Third Ww Domain Of Human Nedd4l In Complex With Doubly Phosp Human Smad3 Derived Peptide
authors M.J.Macias, E.Aragon, N.Goerner, A.Zaromytidou, Q.Xi, A.Escobedo, J.Massague
compound source
Molecule: E3 Ubiquitin-Protein Ligase Nedd4-Like
Chain: A
Fragment: Ww 3 Domain Residues 496-535
Synonym: Nedd4.2, Nedd4-2
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nedd4l, Kiaa0439, Nedl3
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector: Petm11

Molecule: Mothers Against Decapentaplegic Homolog 3
Chain: B
Fragment: Sequence Database Residues 202-211
Synonym: Mad Homolog 3, Mad3, Mothers Against Dpp Homolog 3 Jv15-2, Smad Family Member 3, Smad 3, Smad3, Hsmad3;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
ligand SEP enzyme Ligase E.C.6.3.2 BRENDA
Primary referenceA Smad action turnover switch operated by WW domain readers of a phosphoserine code., Aragon E, Goerner N, Zaromytidou AI, Xi Q, Escobedo A, Massague J, Macias MJ, Genes Dev. 2011 Jun 15;25(12):1275-88. PMID:21685363
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (205 Kb) [Save to disk]
  • Biological Unit Coordinates (2laj.pdb1.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 2LAJ
  • CSU: Contacts of Structural Units for 2LAJ
  • Original NMR restraints for 2LAJ from PDB
  • Retrieve 2LAJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LAJ from S2C, [Save to disk]
  • View 2LAJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LAJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LAJ, from MSDmotif at EBI
  • Fold representative 2laj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2laj_B] [2laj] [2laj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 2LAJ with the sequences similar proteins can be viewed for 2LAJ's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2LAJ
  • Community annotation for 2LAJ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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