2LB1 Structure of the second domain of human Smurf1 in complex with a human Smad1 derived peptide date
authors Macias, M.J., Aragon, E., Goerner, N., Zaromytidou, A., Xi, Q., Escobedo, A., Massague, J.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand NH2 enzyme
Primary referenceA Smad action turnover switch operated by WW domain readers of a phosphoserine code., Aragon E, Goerner N, Zaromytidou AI, Xi Q, Escobedo A, Massague J, Macias MJ, Genes Dev. 2011 Jun 15;25(12):1275-88. PMID:21685363
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (254 Kb) [Save to disk]
  • Biological Unit Coordinates (2lb1.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 2LB1
  • CSU: Contacts of Structural Units for 2LB1
  • Original NMR restraints for 2LB1 from PDB
  • Retrieve 2LB1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LB1 from S2C, [Save to disk]
  • View 2LB1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LB1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LB1, from MSDmotif at EBI
  • Fold representative 2lb1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lb1_A] [2lb1_B] [2lb1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2LB1: [WW ] by SMART
  • Other resources with information on 2LB1
  • Community annotation for 2LB1 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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