2LBM Metal Binding Protein Structural Protein date Apr 08, 2011
title Solution Structure Of The Add Domain Of Atrx Complexed With Tail H3 1-15 K9me3
authors S.Eustermann, J.Yang, D.Neuhaus
compound source
Molecule: Transcriptional Regulator Atrx
Chain: A
Fragment: Unp Residues 159-296
Synonym: Atp-Dependent Helicase Atrx, X-Linked Helicase II, Nuclear Protein, Xnp, Znf-Hx;
Ec: 3.6.4.12
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Atrx, Rad54l, Xh2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pet30a

Molecule: Histone Tail H3 K9me3
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Synthetic Peptide
methodSolution NMR
ligand M3L, ZN enzyme Hydrolase E.C.3.6.4.12 BRENDA
Primary referenceCombinatorial readout of histone H3 modifications specifies localization of ATRX to heterochromatin., Eustermann S, Yang JC, Law MJ, Amos R, Chapman LM, Jelinska C, Garrick D, Clynes D, Gibbons RJ, Rhodes D, Higgs DR, Neuhaus D, Nat Struct Mol Biol. 2011 Jun 12. doi: 10.1038/nsmb.2070. PMID:21666677
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1029 Kb) [Save to disk]
  • Biological Unit Coordinates (2lbm.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 2LBM
  • CSU: Contacts of Structural Units for 2LBM
  • Original NMR restraints for 2LBM from PDB
  • Retrieve 2LBM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LBM from S2C, [Save to disk]
  • View 2LBM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LBM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LBM, from MSDmotif at EBI
  • Fold representative 2lbm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lbm] [2lbm_A] [2lbm_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2LBM: [RING ] by SMART
  • Alignments of the sequence of 2LBM with the sequences similar proteins can be viewed for 2LBM's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2LBM
  • Community annotation for 2LBM at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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