2LD1 Metal Binding Protein date May 13, 2011
title Structures And Chemical Shift Assignments For The Add Domain Atrx Protein
authors D.Neuhaus, J.Yang
compound source
Molecule: Transcriptional Regulator Atrx
Chain: A
Fragment: Add Domain, Residues 159-296
Synonym: Atp-Dependent Helicase Atrx, X-Linked Helicase II, Nuclear Protein, Xnp, Znf-Hx;
Ec: 3.6.4.12
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Atrx, Rad54l, Xh2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 De3 Rosetta Plyss
Expression_system_vector: Pet30a
methodSolution NMR
ligand ZN enzyme Hydrolase E.C.3.6.4.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural consequences of disease-causing mutations in the ATRX-DNMT3-DNMT3L (ADD) domain of the chromatin-associated protein ATRX., Argentaro A, Yang JC, Chapman L, Kowalczyk MS, Gibbons RJ, Higgs DR, Neuhaus D, Rhodes D, Proc Natl Acad Sci U S A. 2007 Jul 17;104(29):11939-44. Epub 2007 Jul 3. PMID:17609377
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1258 Kb) [Save to disk]
  • Biological Unit Coordinates (2ld1.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 2LD1
  • CSU: Contacts of Structural Units for 2LD1
  • Original NMR restraints for 2LD1 from PDB
  • Retrieve 2LD1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LD1 from S2C, [Save to disk]
  • View 2LD1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LD1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LD1, from MSDmotif at EBI
  • Fold representative 2ld1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ld1] [2ld1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2LD1: [RING ] by SMART
  • Alignments of the sequence of 2LD1 with the sequences similar proteins can be viewed for 2LD1's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2LD1
  • Community annotation for 2LD1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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