2LDY Rna Binding Protein date Jun 03, 2011
title Solution Structure Of The Rmm-Ctd Domains Of Human Line-1 Or
authors M.Coles, V.Truffault
compound source
Molecule: Orf1 Codes For A 40 Kda Product
Chain: A
Fragment: Sequence Database Residues 157-330
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta2
Expression_system_vector: Pet 15b
methodSolution NMR
Primary referenceTrimeric structure and flexibility of the L1ORF1 protein in human L1 retrotransposition., Khazina E, Truffault V, Buttner R, Schmidt S, Coles M, Weichenrieder O, Nat Struct Mol Biol. 2011 Aug 7. doi: 10.1038/nsmb.2097. PMID:21822284
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1022 Kb) [Save to disk]
  • Biological Unit Coordinates (2ldy.pdb1.gz) 57 Kb
  • CSU: Contacts of Structural Units for 2LDY
  • Original NMR restraints for 2LDY from PDB
  • Retrieve 2LDY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LDY from S2C, [Save to disk]
    • View 2LDY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2LDY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2LDY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ldy] [2ldy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2LDY
  • Community annotation for 2LDY at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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