2LEN Hydrolase date Jun 19, 2011
title Solution Structure Of Uchl1 S18y Variant
authors H.Tse
compound source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase Isozyme L1
Chain: A
Synonym: Uch-L1, Neuron Cytoplasmic Protein 9.5, Pgp 9.5, P Ubiquitin Thioesterase L1;
Ec: 3.4.19.12
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Uchl1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta Bl21
Expression_system_vector_type: Vector
Expression_system_vector: Pet22b
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.4.19.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1107 Kb) [Save to disk]
  • Biological Unit Coordinates (2len.pdb1.gz) 56 Kb
  • CSU: Contacts of Structural Units for 2LEN
  • Original NMR restraints for 2LEN from PDB
  • Retrieve 2LEN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LEN from S2C, [Save to disk]
  • View 2LEN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LEN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LEN, from MSDmotif at EBI
  • Fold representative 2len from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2len] [2len_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 2LEN with the sequences similar proteins can be viewed for 2LEN's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2LEN
  • Community annotation for 2LEN at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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