2LFM Protein Fibril date Jul 06, 2011
title A Partially Folded Structure Of Amyloid-Beta(1 40) In An Aqu Environment
authors S.Vivekanandan, J.R.Brender, S.Y.Lee, A.Ramamoorthy
compound source
Molecule: Beta-Amyloid Protein 40
Chain: A
Synonym: Beta-App40
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
subcellular loc. Membrane localization by OPM: Eukaryotic plasma membrane
extracellular side
cytoplasmic side

Primary referenceA partially folded structure of amyloid-beta(1-40) in an aqueous environment., Vivekanandan S, Brender JR, Lee SY, Ramamoorthy A, Biochem Biophys Res Commun. 2011 Jun 25. PMID:21726530
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (233 Kb) [Save to disk]
  • Biological Unit Coordinates (2lfm.pdb1.gz) 12 Kb
  • CSU: Contacts of Structural Units for 2LFM
  • Original NMR restraints for 2LFM from PDB
  • Retrieve 2LFM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LFM from S2C, [Save to disk]
  • View 2LFM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LFM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LFM, from MSDmotif at EBI
  • Fold representative 2lfm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lfm_A] [2lfm]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2LFM
  • Community annotation for 2LFM at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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