2LFM Protein Fibril date Jul 06, 2011
title A Partially Folded Structure Of Amyloid-Beta(1 40) In An Aqu Environment
authors S.Vivekanandan, J.R.Brender, S.Y.Lee, A.Ramamoorthy
compound source
Molecule: Beta-Amyloid Protein 40
Chain: A
Synonym: Beta-App40
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
Primary referenceA partially folded structure of amyloid-beta(1-40) in an aqueous environment., Vivekanandan S, Brender JR, Lee SY, Ramamoorthy A, Biochem Biophys Res Commun. 2011 Jun 25. PMID:21726530
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (233 Kb) [Save to disk]
  • Biological Unit Coordinates (2lfm.pdb1.gz) 12 Kb
  • CSU: Contacts of Structural Units for 2LFM
  • Original NMR restraints for 2LFM from PDB
  • Retrieve 2LFM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LFM from S2C, [Save to disk]
  • View 2LFM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LFM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LFM, from MSDmotif at EBI
  • Fold representative 2lfm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lfm_A] [2lfm]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 2LFM with the sequences similar proteins can be viewed for 2LFM's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2LFM
  • Community annotation for 2LFM at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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