2LGK Ligase Dna Binding Protein date Jul 28, 2011
title Nmr Structure Of Uhrf1 Phd Domains In A Complex With Histone Peptide
authors C.Wang, J.Shen, Z.Yang, P.Chen, B.Zhao, W.Hu, W.Lan, X.Tong, H.Wu, G.
compound source
Molecule: E3 Ubiquitin-Protein Ligase Uhrf1
Chain: A
Fragment: Unp Residues 298-366
Synonym: Inverted Ccaat Box-Binding Protein Of 90 Kda, Nucl Protein 95, Nuclear Zinc Finger Protein Np95, Hunp95, Ring Protein 106, Transcription Factor Icbp90, Ubiquitin-Like Ph Finger Domain-Containing Protein 1, Ubiquitin-Like-Containi Ring Finger Domains Protein 1;
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Petduet

Molecule: Histone H3 Peptide
Chain: B
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized.
methodSolution NMR
ligand M3L, ZN enzyme Ligase E.C.6.3.2 BRENDA
Primary referenceStructural basis for site-specific reading of unmodified R2 of histone H3 tail by UHRF1 PHD finger., Wang C, Shen J, Yang Z, Chen P, Zhao B, Hu W, Lan W, Tong X, Wu H, Li G, Cao C, Cell Res. 2011 Sep;21(9):1379-82. doi: 10.1038/cr.2011.123. Epub 2011 Aug, 2. PMID:21808299
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (400 Kb) [Save to disk]
  • Biological Unit Coordinates (2lgk.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 2LGK
  • CSU: Contacts of Structural Units for 2LGK
  • Original NMR restraints for 2LGK from PDB
  • Retrieve 2LGK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LGK from S2C, [Save to disk]
  • View 2LGK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LGK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2LGK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lgk] [2lgk_B] [2lgk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2LGK: [PHD] [RING ] by SMART
  • Other resources with information on 2LGK
  • Community annotation for 2LGK at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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