2LJ5 Signaling Protein date Sep 06, 2011
title Description Of The Structural Fluctuations Of Proteins From Based Calculations Of Residual Dipolar Couplings
authors A.De Simone, R.Montalvao, M.Vendruscolo
compound source
Molecule: Ubiquitin
Chain: A
Synonym: Cep52, Ubiquitin A-52 Residue Ribosomal Protein Fu Product 1, Ubiquitin, 60s Ribosomal Protein L40, Ubiquitin- Ribosomal Protein S27a, Ubiquitin Carboxyl Extension Protei Ubiquitin, 40s Ribosomal Protein S27a, Polyubiquitin-B, Ubi Polyubiquitin-C, Ubiquitin;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Uba52, Ubcep2, Rps27a, Uba80, Ubcep1, Ubb, Ubc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
Primary referenceDetermination of structural fluctuations of proteins from structure-based calculations of residual dipolar couplings., Montalvao RW, De Simone A, Vendruscolo M, J Biomol NMR. 2012 Jun 23. PMID:22729708
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (6170 Kb) [Save to disk]
  • Biological Unit Coordinates (2lj5.pdb1.gz) 24 Kb
  • CSU: Contacts of Structural Units for 2LJ5
  • Original NMR restraints for 2LJ5 from PDB
  • Retrieve 2LJ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LJ5 from S2C, [Save to disk]
  • View 2LJ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LJ5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2LJ5, from MSDmotif at EBI
  • Fold representative 2lj5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lj5_A] [2lj5]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2LJ5: [UBQ ] by SMART
  • Other resources with information on 2LJ5
  • Community annotation for 2LJ5 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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